NIH Pancreas-CT Dataset
Holger R. Roth and Amal Farag and Evrim B. Turkbey and Le Lu and Jiamin Liu and Ronald M. Summers.

Pancreas-CT (164 files)
data/PANCREAS_0001.nii.gz 64.99MB
data/PANCREAS_0002.nii.gz 57.14MB
data/PANCREAS_0003.nii.gz 63.26MB
data/PANCREAS_0004.nii.gz 64.90MB
data/PANCREAS_0005.nii.gz 50.66MB
data/PANCREAS_0006.nii.gz 59.03MB
data/PANCREAS_0007.nii.gz 51.71MB
data/PANCREAS_0008.nii.gz 50.07MB
data/PANCREAS_0009.nii.gz 44.16MB
data/PANCREAS_0010.nii.gz 55.84MB
data/PANCREAS_0011.nii.gz 55.86MB
data/PANCREAS_0012.nii.gz 54.57MB
data/PANCREAS_0013.nii.gz 54.81MB
data/PANCREAS_0014.nii.gz 63.41MB
data/PANCREAS_0015.nii.gz 75.66MB
data/PANCREAS_0016.nii.gz 59.65MB
data/PANCREAS_0017.nii.gz 68.28MB
data/PANCREAS_0018.nii.gz 59.41MB
data/PANCREAS_0019.nii.gz 59.57MB
data/PANCREAS_0020.nii.gz 52.37MB
data/PANCREAS_0021.nii.gz 60.90MB
data/PANCREAS_0022.nii.gz 54.42MB
data/PANCREAS_0023.nii.gz 56.70MB
data/PANCREAS_0024.nii.gz 71.72MB
data/PANCREAS_0025.nii.gz 54.83MB
data/PANCREAS_0026.nii.gz 83.34MB
data/PANCREAS_0027.nii.gz 56.52MB
data/PANCREAS_0028.nii.gz 54.80MB
data/PANCREAS_0029.nii.gz 57.51MB
data/PANCREAS_0030.nii.gz 68.47MB
data/PANCREAS_0031.nii.gz 54.11MB
data/PANCREAS_0032.nii.gz 59.31MB
data/PANCREAS_0033.nii.gz 60.68MB
data/PANCREAS_0034.nii.gz 49.60MB
data/PANCREAS_0035.nii.gz 63.71MB
data/PANCREAS_0036.nii.gz 61.77MB
data/PANCREAS_0037.nii.gz 58.39MB
data/PANCREAS_0038.nii.gz 51.26MB
data/PANCREAS_0039.nii.gz 55.11MB
data/PANCREAS_0040.nii.gz 75.75MB
data/PANCREAS_0041.nii.gz 61.60MB
data/PANCREAS_0042.nii.gz 58.63MB
data/PANCREAS_0043.nii.gz 50.24MB
data/PANCREAS_0044.nii.gz 124.44MB
data/PANCREAS_0045.nii.gz 57.72MB
data/PANCREAS_0046.nii.gz 47.29MB
data/PANCREAS_0047.nii.gz 55.87MB
data/PANCREAS_0048.nii.gz 52.51MB
data/PANCREAS_0049.nii.gz 60.24MB
data/PANCREAS_0050.nii.gz 61.96MB
data/PANCREAS_0051.nii.gz 55.52MB
data/PANCREAS_0052.nii.gz 65.62MB
data/PANCREAS_0053.nii.gz 59.97MB
data/PANCREAS_0054.nii.gz 57.71MB
data/PANCREAS_0055.nii.gz 55.75MB
data/PANCREAS_0056.nii.gz 52.65MB
data/PANCREAS_0057.nii.gz 56.73MB
data/PANCREAS_0058.nii.gz 62.34MB
data/PANCREAS_0059.nii.gz 52.46MB
data/PANCREAS_0060.nii.gz 78.29MB
data/PANCREAS_0061.nii.gz 57.96MB
data/PANCREAS_0062.nii.gz 51.60MB
data/PANCREAS_0063.nii.gz 66.28MB
data/PANCREAS_0064.nii.gz 56.97MB
data/PANCREAS_0065.nii.gz 52.85MB
data/PANCREAS_0066.nii.gz 54.96MB
data/PANCREAS_0067.nii.gz 53.63MB
data/PANCREAS_0068.nii.gz 53.34MB
data/PANCREAS_0069.nii.gz 60.93MB
data/PANCREAS_0070.nii.gz 58.46MB
data/PANCREAS_0071.nii.gz 52.75MB
data/PANCREAS_0072.nii.gz 49.94MB
data/PANCREAS_0073.nii.gz 63.93MB
data/PANCREAS_0074.nii.gz 49.92MB
data/PANCREAS_0075.nii.gz 60.84MB
data/PANCREAS_0076.nii.gz 58.36MB
data/PANCREAS_0077.nii.gz 67.28MB
data/PANCREAS_0078.nii.gz 67.93MB
data/PANCREAS_0079.nii.gz 64.17MB
data/PANCREAS_0080.nii.gz 42.68MB
data/PANCREAS_0081.nii.gz 48.92MB
data/PANCREAS_0082.nii.gz 62.50MB
TCIA_pancreas_labels-02-05-2017/label0001.nii.gz 71.27kB
TCIA_pancreas_labels-02-05-2017/label0002.nii.gz 111.90kB
TCIA_pancreas_labels-02-05-2017/label0003.nii.gz 68.51kB
TCIA_pancreas_labels-02-05-2017/label0004.nii.gz 66.19kB
TCIA_pancreas_labels-02-05-2017/label0005.nii.gz 64.17kB
TCIA_pancreas_labels-02-05-2017/label0006.nii.gz 64.81kB
TCIA_pancreas_labels-02-05-2017/label0007.nii.gz 62.10kB
TCIA_pancreas_labels-02-05-2017/label0008.nii.gz 67.89kB
TCIA_pancreas_labels-02-05-2017/label0009.nii.gz 60.58kB
TCIA_pancreas_labels-02-05-2017/label0010.nii.gz 63.98kB
TCIA_pancreas_labels-02-05-2017/label0011.nii.gz 66.89kB
TCIA_pancreas_labels-02-05-2017/label0012.nii.gz 62.91kB
TCIA_pancreas_labels-02-05-2017/label0013.nii.gz 58.43kB
TCIA_pancreas_labels-02-05-2017/label0014.nii.gz 68.57kB
TCIA_pancreas_labels-02-05-2017/label0015.nii.gz 76.36kB
TCIA_pancreas_labels-02-05-2017/label0016.nii.gz 91.34kB
TCIA_pancreas_labels-02-05-2017/label0017.nii.gz 90.40kB
TCIA_pancreas_labels-02-05-2017/label0018.nii.gz 67.41kB
TCIA_pancreas_labels-02-05-2017/label0019.nii.gz 66.04kB
TCIA_pancreas_labels-02-05-2017/label0020.nii.gz 66.81kB
TCIA_pancreas_labels-02-05-2017/label0021.nii.gz 71.79kB
TCIA_pancreas_labels-02-05-2017/label0022.nii.gz 93.16kB
TCIA_pancreas_labels-02-05-2017/label0023.nii.gz 93.02kB
TCIA_pancreas_labels-02-05-2017/label0024.nii.gz 91.20kB
TCIA_pancreas_labels-02-05-2017/label0025.nii.gz 60.58kB
TCIA_pancreas_labels-02-05-2017/label0026.nii.gz 94.49kB
TCIA_pancreas_labels-02-05-2017/label0027.nii.gz 67.17kB
TCIA_pancreas_labels-02-05-2017/label0028.nii.gz 62.61kB
TCIA_pancreas_labels-02-05-2017/label0029.nii.gz 60.70kB
TCIA_pancreas_labels-02-05-2017/label0030.nii.gz 87.28kB
TCIA_pancreas_labels-02-05-2017/label0031.nii.gz 93.51kB
TCIA_pancreas_labels-02-05-2017/label0032.nii.gz 72.63kB
TCIA_pancreas_labels-02-05-2017/label0033.nii.gz 92.95kB
TCIA_pancreas_labels-02-05-2017/label0034.nii.gz 64.43kB
TCIA_pancreas_labels-02-05-2017/label0035.nii.gz 67.93kB
TCIA_pancreas_labels-02-05-2017/label0036.nii.gz 68.26kB
TCIA_pancreas_labels-02-05-2017/label0037.nii.gz 62.14kB
TCIA_pancreas_labels-02-05-2017/label0038.nii.gz 64.25kB
TCIA_pancreas_labels-02-05-2017/label0039.nii.gz 60.76kB
TCIA_pancreas_labels-02-05-2017/label0040.nii.gz 74.55kB
TCIA_pancreas_labels-02-05-2017/label0041.nii.gz 70.88kB
TCIA_pancreas_labels-02-05-2017/label0042.nii.gz 90.02kB
TCIA_pancreas_labels-02-05-2017/label0043.nii.gz 64.13kB
TCIA_pancreas_labels-02-05-2017/label0044.nii.gz 141.52kB
TCIA_pancreas_labels-02-05-2017/label0045.nii.gz 64.38kB
TCIA_pancreas_labels-02-05-2017/label0046.nii.gz 61.53kB
TCIA_pancreas_labels-02-05-2017/label0047.nii.gz 59.72kB
TCIA_pancreas_labels-02-05-2017/label0048.nii.gz 61.84kB
TCIA_pancreas_labels-02-05-2017/label0049.nii.gz 67.61kB
TCIA_pancreas_labels-02-05-2017/label0050.nii.gz 88.85kB
TCIA_pancreas_labels-02-05-2017/label0051.nii.gz 61.77kB
TCIA_pancreas_labels-02-05-2017/label0052.nii.gz 66.64kB
TCIA_pancreas_labels-02-05-2017/label0053.nii.gz 90.80kB
TCIA_pancreas_labels-02-05-2017/label0054.nii.gz 66.13kB
TCIA_pancreas_labels-02-05-2017/label0055.nii.gz 63.24kB
TCIA_pancreas_labels-02-05-2017/label0056.nii.gz 64.68kB
TCIA_pancreas_labels-02-05-2017/label0057.nii.gz 69.20kB
TCIA_pancreas_labels-02-05-2017/label0058.nii.gz 94.77kB
TCIA_pancreas_labels-02-05-2017/label0059.nii.gz 59.53kB
TCIA_pancreas_labels-02-05-2017/label0060.nii.gz 90.70kB
TCIA_pancreas_labels-02-05-2017/label0061.nii.gz 72.53kB
TCIA_pancreas_labels-02-05-2017/label0062.nii.gz 63.42kB
TCIA_pancreas_labels-02-05-2017/label0063.nii.gz 90.47kB
TCIA_pancreas_labels-02-05-2017/label0064.nii.gz 64.91kB
TCIA_pancreas_labels-02-05-2017/label0065.nii.gz 64.37kB
TCIA_pancreas_labels-02-05-2017/label0066.nii.gz 63.27kB
TCIA_pancreas_labels-02-05-2017/label0067.nii.gz 64.10kB
TCIA_pancreas_labels-02-05-2017/label0068.nii.gz 64.95kB
TCIA_pancreas_labels-02-05-2017/label0069.nii.gz 66.48kB
TCIA_pancreas_labels-02-05-2017/label0070.nii.gz 63.84kB
TCIA_pancreas_labels-02-05-2017/label0071.nii.gz 61.44kB
TCIA_pancreas_labels-02-05-2017/label0072.nii.gz 65.42kB
TCIA_pancreas_labels-02-05-2017/label0073.nii.gz 93.32kB
TCIA_pancreas_labels-02-05-2017/label0074.nii.gz 62.26kB
TCIA_pancreas_labels-02-05-2017/label0075.nii.gz 67.09kB
TCIA_pancreas_labels-02-05-2017/label0076.nii.gz 63.25kB
TCIA_pancreas_labels-02-05-2017/label0077.nii.gz 68.15kB
TCIA_pancreas_labels-02-05-2017/label0078.nii.gz 90.32kB
TCIA_pancreas_labels-02-05-2017/label0079.nii.gz 75.31kB
TCIA_pancreas_labels-02-05-2017/label0080.nii.gz 56.08kB
TCIA_pancreas_labels-02-05-2017/label0081.nii.gz 63.03kB
TCIA_pancreas_labels-02-05-2017/label0082.nii.gz 65.71kB
Type: Dataset
Tags:

Bibtex:
@article{,
title= {NIH Pancreas-CT Dataset},
keywords= {},
journal= {},
author= {Holger R. Roth and Amal Farag and Evrim B. Turkbey and Le Lu and Jiamin Liu and Ronald M. Summers. },
year= {},
url= {http://doi.org/10.7937/K9/TCIA.2016.tNB1kqBU},
license= {Creative Commons Attribution 3.0 Unported License},
abstract= {### Summary

The National Institutes of Health Clinical Center performed 82 abdominal contrast enhanced 3D CT scans (~70 seconds after intravenous contrast injection in portal-venous) from 53 male and 27 female subjects.  Seventeen of the subjects are healthy kidney donors scanned prior to nephrectomy.  The remaining 65 patients were selected by a radiologist from patients who neither had major abdominal pathologies nor pancreatic cancer lesions.  Subjects' ages range from 18 to 76 years with a mean age of 46.8 ± 16.7. The CT scans have resolutions of 512x512 pixels with varying pixel sizes and slice thickness between 1.5 − 2.5 mm, acquired on Philips and Siemens MDCT scanners (120 kVp tube voltage).

A medical student manually performed slice-by-slice segmentations of the pancreas as ground-truth and these were verified/modified by an experienced radiologist.

The images were processed into nii files using the following script:

```
for i in `ls . | grep PAN`; do 
   echo $i; 
   dcm2niix -vox 1 -z y -o ./data/ -m y -s y -f %n $i
done
```

### Citation

Roth HR, Lu L, Farag A, Shin H-C, Liu J, Turkbey EB, Summers RM. DeepOrgan: Multi-level Deep Convolutional Networks for Automated Pancreas Segmentation. N. Navab et al. (Eds.): MICCAI 2015, Part I, LNCS 9349, pp. 556–564, 2015. 

### Examples

![](https://i.imgur.com/4aZNgw6.gifv)

![](https://i.imgur.com/kfhhH7x.png)

![](https://i.imgur.com/kGbz9hl.png)

},
superseded= {},
terms= {}
}

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