PanNuke: An Open Pan-Cancer Histology Dataset for Nuclei Instance Segmentation and Classification
Gamper, Jevgenij and Koohbanani, Navid Alemi and Benet, Ksenija and Khuram, Ali and Rajpoot, Nasir

pannuke (3 files)
fold_1.zip 700.28MB
fold_2.zip 658.84MB
fold_3.zip 717.97MB
Type: Dataset
Tags:

Bibtex:
@article{,
title= {PanNuke: An Open Pan-Cancer Histology Dataset for Nuclei Instance Segmentation and Classification},
keywords= {},
author= {Gamper, Jevgenij and Koohbanani, Navid Alemi and Benet, Ksenija and Khuram, Ali and Rajpoot, Nasir},
abstract= {https://i.imgur.com/iYlXSCm.png


Semi automatically generated nuclei instance segmentation and classification dataset with exhaustive nuclei labels across 19 different tissue types. The dataset consists of 481 visual fields, of which 312 are randomly sampled from more than 20K whole slide images at different magnifications, from multiple data sources. In total the dataset contains 205,343 labeled nuclei, each with an instance segmentation mask. Models trained on pannuke can aid in whole slide image tissue type segmentation, and generalise to new tissues. PanNuke demonstrates one of the first succesfully semi-automatically generated datasets.

## citation

```
@inproceedings{gamper2019pannuke,
  title={PanNuke: an open pan-cancer histology dataset for nuclei instance segmentation and classification},
  author={Gamper, Jevgenij and Koohbanani, Navid Alemi and Benet, Ksenija and Khuram, Ali and Rajpoot, Nasir},
  booktitle={European Congress on Digital Pathology},
  pages={11--19},
  year={2019},
  organization={Springer}
}
@article{gamper2020pannuke,
  title={PanNuke Dataset Extension, Insights and Baselines},
  author={Gamper, Jevgenij and Koohbanani, Navid Alemi and Graham, Simon and Jahanifar, Mostafa and Khurram, Syed Ali and Azam, Ayesha and Hewitt, Katherine and Rajpoot, Nasir},
  journal={arXiv preprint arXiv:2003.10778},
  year={2020}
}
```

https://i.imgur.com/T4ogyHR.png},
terms= {},
license= {http://creativecommons.org/licenses/by-nc-sa/4.0/},
superseded= {},
url= {https://jgamper.github.io/PanNukeDataset/}
}

10 day statistics (1 downloads)

Average Time 6 mins, 32 secs
Average Speed 5.30MB/s
Best Time 6 mins, 32 secs
Best Speed 5.30MB/s
Worst Time 6 mins, 32 secs
Worst Speed 5.30MB/s
Report